\HeaderA{BCCC}{The CC Bicluster algorithm}{BCCC}
\aliasA{BCCC-class}{BCCC}{BCCC.Rdash.class}
\aliasA{biclust,matrix,BCCC-method}{BCCC}{biclust,matrix,BCCC.Rdash.method}
\aliasA{CC}{BCCC}{CC}
\keyword{cluster}{BCCC}
\keyword{classif}{BCCC}
\begin{Description}\relax
Performs CC Biclustering based on the framework by Cheng and Church (2000). Searches for submatrices with a score lower than a specific treshold ind a standardizes data matrix.
\end{Description}
\begin{Usage}
\begin{verbatim}
## S4 method for signature 'matrix, BCCC':
biclust(x, method=BCCC(), delta, alpha=1.5, number=100)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{x}] Data matrix.
\item[\code{method}] Here BCCC, to perform CC algorithm
\item[\code{delta}] Maximum of accepted score.
\item[\code{alpha}] Scaling factor.
\item[\code{number}] Number of bicluster to be found.
\end{ldescription}
\end{Arguments}
\begin{Value}
Returns an object of class \code{Biclust}.
\end{Value}
\begin{Author}\relax
Sebastian Kaiser 
\email{sebastian.kaiser@stat.uni-muenchen.de}
\end{Author}
\begin{References}\relax
Cheng, Y. \& Church, G.M. 
Biclustering of Expression Data 
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 
2000, 1, 93-103
\end{References}
\begin{SeeAlso}\relax
\code{\LinkA{biclust}{biclust}}, \code{\LinkA{Biclust}{Biclust}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
test <- matrix(rbinom(400, 50, 0.4), 20, 20)
res <- biclust(test, method=BCCC(), delta=1.5,  alpha=1, number=10)
res
\end{ExampleCode}
\end{Examples}

