biclustmember            package:biclust            R Documentation

_D_r_a_w _H_e_a_t_m_a_p

_D_e_s_c_r_i_p_t_i_o_n:

     Draws a membership graph cluster x columns, to show which

_U_s_a_g_e:

     biclustmember(bicResult,x,mid=T,Titel="BiCluster Membership Graph",...)

     clustmember(res,x,mid=T,Titel="Cluster Membership Graph",...)

_A_r_g_u_m_e_n_t_s:

       x: The data matrix

bicResult: BiclustResult object with a bicluster result set. If this
          value is set to NULL, the data matrix is drawn as a heatmap,
          without any reordering. Default NULL.

     res: Cluster Result (kcca object)

     mid: If TRUE, shows the value of the remaining objects inside the
          cluster value, else shows both aside each other.

   Titel: Gives the title of the plot

     ...: Additional plot options

_A_u_t_h_o_r(_s):

     Sebastian Kaiser sebastian.kaiser@stat.uni-muenchen.de

_S_e_e _A_l_s_o:

     'bubbleplot' for simultaneous representation of biclusters.
     'parallelCoordinates'for single representation of biclusters as
     lines of gene or condition profiles. 'drawHeatmap'for Heatmap
     representation of biclusters.

_E_x_a_m_p_l_e_s:

       s2=matrix(rnorm(400),20,20)
       s2[12:16,12:16]=rnorm(25,3,0.3)
       set.seed(1)
       bics <- biclust(s2,BCPlaid(), back.fit = 2, shuffle = 3, fit.model = ~m + a + b,
       iter.startup = 5, iter.layer = 30,  verbose = TRUE)
       biclustmember(bics,s2)

