\HeaderA{BCBimax}{The Bimax Bicluster algorithm}{BCBimax}
\aliasA{BCBimax-class}{BCBimax}{BCBimax.Rdash.class}
\aliasA{biclust,matrix,BCBimax-method}{BCBimax}{biclust,matrix,BCBimax.Rdash.method}
\aliasA{Bimax}{BCBimax}{Bimax}
\keyword{cluster}{BCBimax}
\keyword{classif}{BCBimax}
\begin{Description}\relax
Performs Bimax Biclustering based on the framework by Prelic et. al.(2006). It searches for submatrices of ones in a logical matrix. Uses the original C code of the authors.
\end{Description}
\begin{Usage}
\begin{verbatim}
## S4 method for signature 'matrix, BCBimax':
biclust(x, method=BCBimax(), minr=2, minc=2, number=100)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{x}] A logical matrix which represents the data.
\item[\code{method}] Here BCBimax, to perform Bimax algorithm
\item[\code{minr}] Minimum row size of resulting bicluster.
\item[\code{minc}] Minimum column size of resulting bicluster.
\item[\code{number}] Number of Bicluster to be found.
\end{ldescription}
\end{Arguments}
\begin{Value}
Returns an object of class \code{Biclust}.
\end{Value}
\begin{Author}\relax
Sebastian Kaiser 
\email{sebastian.kaiser@stat.uni-muenchen.de}
\end{Author}
\begin{References}\relax
Prelic, A.; Bleuler, S.; Zimmermann, P.; Wil, A.; Buhlmann, P.; Gruissem, W.; Hennig, L.; Thiele, L. \& Zitzler, E. 
A Systematic Comparison and Evaluation of Biclustering Methods for Gene Expression Data Bioinformatics,
Oxford Univ Press, 2006, 22, 1122-1129
\end{References}
\begin{SeeAlso}\relax
\code{\LinkA{biclust}{biclust}}, \code{\LinkA{Biclust}{Biclust}}
\end{SeeAlso}
\begin{Examples}
\begin{ExampleCode}
 test <- matrix(rnorm(5000), 100, 50)
 test[11:20,11:20] <- rnorm(100, 3, 0.1)
 loma <- binarize(test,2)
 res <- biclust(x=loma, method=BCBimax(), minr=4, minc=4, number=10)
 res
\end{ExampleCode}
\end{Examples}

