biclust               package:biclust               R Documentation

_T_h_e _b_i_c_l_u_s_t _M_e_t_h_o_d

_D_e_s_c_r_i_p_t_i_o_n:

     The function 'biclust' is the main function of the package. It
     calculates the bicluster in a data matrix using the algorithm
     specified in the method-argument.  Currently the package contains
     5 different methods for the use in 'biclust'. For each algorithm
     see the class help files for further details. For some algorithms
     preproccessing is necessary, e.g. 'BCBimax' only runs with a
     logical matrix.

_U_s_a_g_e:

     ## S4 method for signature 'matrix, BiclustMethod':
     biclust(x,method,...)
     ## S4 method for signature 'matrix, character':
     biclust(x,method,...)

_A_r_g_u_m_e_n_t_s:

       x: Data matrix.

  method: An object of class '"BiclustMethod"' or a character string
          with the name of a '"BiclustMethod"'-class.

     ...: Additional Parameters of the '"BiclustMethod"' 

_V_a_l_u_e:

     Returns an object of class 'Biclust'.

_A_u_t_h_o_r(_s):

     Sebastian Kaiser  sebastian.kaiser@stat.uni-muenchen.de

_S_e_e _A_l_s_o:

     'Biclust-class', 'BCCC', 'BCXmotifs', 'BCPlaid', 'BCSpectral',
     'BCBimax', 'BCQuest', 'BiclustMethod-class'

_E_x_a_m_p_l_e_s:

     test <- matrix(rbinom(400, 50, 0.4), 20, 20)
     res1 <- biclust(test, method=BCCC(), delta=1.5,  alpha=1, number=10)

