plotclust              package:biclust              R Documentation

_B_a_r_p_l_o_t _o_f _B_i_c_l_u_s_t_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Draws a graph to compare the values inside the diffrent biclusters
     with the values outside the bicluster

_U_s_a_g_e:

     plotclust(res,x,bicluster=TRUE,legende=FALSE,noC=5,wyld=3,Titel="Plotclust",...)

_A_r_g_u_m_e_n_t_s:

       x: The data matrix

     res: BiclustResult object if bicluster=TRUE else a normal kcca
          object.

bicluster: If TRUE,res is treated as a BiclustResult object

 legende: Draws a legend.

     noC: Number of Clusters drawn

    wyld: Gives the distance between plot and axis.

   Titel: Gives the title of the plot.

     ...: Additional plot options

_A_u_t_h_o_r(_s):

     Sebastian Kaiser sebastian.kaiser@stat.uni-muenchen.de

_S_e_e _A_l_s_o:

     'bubbleplot' for simultaneous representation of biclusters.
     'parallelCoordinates'for single representation of biclusters as
     lines of gene or condition profiles. 'drawHeatmap'for Heatmap
     representation of biclusters.

_E_x_a_m_p_l_e_s:

       s2=matrix(rnorm(400),20,20)
       s2[12:16,12:16]=rnorm(25,3,0.3)
       set.seed(1)
       bics <- biclust(s2,BCPlaid(), back.fit = 2, shuffle = 3, fit.model = ~m + a + b,
       iter.startup = 5, iter.layer = 30,  verbose = TRUE)
       plotclust(bics,s2)

