# FABIA: Factor Analysis for Bicluster Acquisition

## Documentation for package ‘fabia’ version 0.1.3

## User Guides and Package Vignettes

Read overview or browse directory.

## Help Pages

Breast_A | Subclasses of van't Veer breast cancer microarray data set
CBreast | Subclasses of van't Veer breast cancer microarray data set
CDLBCL | Microarray data set of Rosenwald diffuse large-B-cell lymphoma
CMulti | Microarray data set of Su on different mammalian tissue types
DLBCL_B | Microarray data set of Rosenwald diffuse large-B-cell lymphoma
eqscplotLoc | Local Version of eqscplot from the package MASS
estimateMode | Estimation of the modes of the rows of a matrix
extract_bic | Extraction of Biclusters
extract_plot | Plotting of Biclustering Results
fabi | Factor Analysis for Bicluster Acquisition: Laplace Prior (FABI)
fabia | Factor Analysis for Bicluster Acquisition: Laplace Prior (FABIA)
fabiaDemo | Demos for fabia
fabiap | Factor Analysis for Bicluster Acquisition: Post-Projection (FABIAP)
fabias | Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIAS)
fabiasp | Factor Analysis for Bicluster Acquisition: Sparseness Projection (FABIASP)
fabiaVersion | Display version info for package and for FABIA
Factorization | The Factorization Class
Factorization-class | The Factorization Class
make_fabi_data | Generation of Bicluster Data
make_fabi_data_blocks | Generation of Bicluster Data with Bicluster Blocks
make_fabi_data_blocks_pos | Generation of Bicluster Data with Bicluster Blocks
make_fabi_data_pos | Generation of Bicluster Data
mfsc | Sparse Matrix Factorization for Bicluster Analysis (MFSC)
Multi_A | Microarray data set of Su on different mammalian tissue types
myImagePlot | Plotting of a Matrix
nmfdiv | Non-negative Matrix Factorization: Kullaback-Leibler Divergence
nmfeu | Non-negative Matrix Factorization: Euclidean Distance
nmfsc | Non-negative Sparse Matrix Factorization
nprojfunc | Projection of a Vector to a Non-negative Sparse Vector
plot | Plot of a Matrix Factorization
plot,ANY,ANY-method | Plot of a Matrix Factorization
plot,Factorization,missing-method | Plot of a Matrix Factorization
plot-methods | Plot of a Matrix Factorization
plotBicluster | Plotting of a bicluster
projfunc | Projection of a Vector to a Sparse Vector
show | Plot Statistics of a Matrix Factorization
show,ANY-method | Plot Statistics of a Matrix Factorization
show,classRepresentation-method | Plot Statistics of a Matrix Factorization
show,Factorization-method | Plot Statistics of a Matrix Factorization
show,genericFunction-method | Plot Statistics of a Matrix Factorization
show,MethodDefinition-method | Plot Statistics of a Matrix Factorization
show,MethodSelectionReport-method | Plot Statistics of a Matrix Factorization
show,MethodWithNext-method | Plot Statistics of a Matrix Factorization
show,ObjectsWithPackage-method | Plot Statistics of a Matrix Factorization
show,oldClass-method | Plot Statistics of a Matrix Factorization
show,signature-method | Plot Statistics of a Matrix Factorization
show,traceable-method | Plot Statistics of a Matrix Factorization
show-methods | Plot Statistics of a Matrix Factorization
showSelected | Plot Selected Statistics of a Matrix Factorization
showSelected,ANY,ANY-method | Plot Selected Statistics of a Matrix Factorization
showSelected,Factorization,missing-method | Plot Selected Statistics of a Matrix Factorization
showSelected,Factorization-method | Plot Selected Statistics of a Matrix Factorization
showSelected,genericFunction-method | Plot Selected Statistics of a Matrix Factorization
showSelected-methods | Plot Selected Statistics of a Matrix Factorization
summary | Summary of Matrix Factorization
summary,ANY-method | Summary of Matrix Factorization
summary,Factorization-method | Summary of Matrix Factorization
summary-methods | Summary of Matrix Factorization
XBreast | Subclasses of van't Veer breast cancer microarray data set
XDLBCL | Microarray data set of Rosenwald diffuse large-B-cell lymphoma
XMulti | Microarray data set of Su on different mammalian tissue types